1.
Jalview - Download Page
If your browser hasn't been set up to run Java WebStart JNLP files, the Start link above will download a file called jalview.jnlp. ...
2.
Jalview - Download Page
<path to java runtime installation>/bin/javaws; <path to jdk installation>/jre/bin/javaws; javaws.exe. If you think that your browser should really be ...
3.
Jalview - Changing the JVM Memory Settings
The 1000m value corresponds to the maximum number of megabytes of space that java objects can occupy. The 500m is the initial heap size that java will run ...
4.
The Alignment Annotations File
2|1|1|2|3|4|5|4 NO_GRAPH Icons ||||E,Sheet1|E|E||||H,Sheet 2|H|H|H|||||| NO_GRAPH Purple Letters m|y|p|r|o|t|e|i|n COLOUR Bar Graph 2 blue COLOUR Red Values ...
5.
Jalview - Download Page
If your browser hasn't been set up to run Java WebStart JNLP files, the Start link above will download a file called jalview.jnlp. ...
6.
Applet Parameters
Package all your data files into a single (or multiple) zip / jar files. This is very useful to reduce download time of large data files. The applet archive ...
7.
Muscle Alignment
Muscle is a program for the alignment of many protein sequences. Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment with high accuracy and high ...
8.
Jalview - Java alignment editor
"Jalview Version 2 - a multiple sequence alignment editor and analysis workbench" Bioinformatics doi: 10.1093/bioinformatics/btp033 ...
9.
Key Strokes
Press Alt key to slide in cursor mode. Right Arrow, Normal, Slides selected sequence(s) right. Press Alt key to slide in cursor mode. Cursor Keys ...
10.
The Tree Viewing Window
The tree viewing window is opened when a tree has been calculated from an alignment, or imported via a file or web service. ...